DNA Binding Motif
| Accessions: | SigG_2 (DBTBS 1.0) |
| Names: | SigG_2 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 7 |
| Consensus: | CAwAmTA |
| Weblogo: | |
| PSSM: | P0 A C G T 01 0.13 0.87 0 0 C 02 0.96 0.03 0 0.01 A 03 0.40 0.05 0 0.55 w 04 0.72 0.04 0.24 0 A 05 0.42 0.57 0 0.01 m 06 0 0.03 0.03 0.94 T 07 0.99 0.01 0.01 0 A |
| Binding TFs: | SigG (Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, region 4) |
| Binding Sites: | bofC_2 csgA_1 dacF_2 gerAA_2 gerBA_1 gerD_1 gerKA_1 glcU_1 gpr_2 sigG_2 sleB splA_1 splB spoIVB_2 spoVAA_1 spoVT_1 sspA_1 sspB_1 sspC sspD_1 sspE_1 sspF sspH sspI_1 sspI_2 sspJ sspK sspL sspM sspN_2 sspO ybaK_2 yckD ydfR ydfS yhcN_2 yhcQ yhcV yitG ykvV yndD yoaR yozQ ypzA yqfS yraG yrrD yteA yuzA yvaB yvdQ yveA yvjB_1 ywhE_2 yxeD |
| Publications: | Gomez M, Cutting S.M. BofC encodes a putative forespore regulator of the Bacillus subtilis sigma K checkpoint. Microbiology (Reading, England) 143 ( Pt 1):157-70 (1997). [Pubmed] Kuwana R, Kasahara Y, Fujibayashi M, Takamatsu H, Ogasawara N, Watabe K. Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology (Reading, England) 148:3971-82 (2002). [Pubmed] Shcheptov M, Chyu G, Bagyan I, Cutting S. Characterization of csgA, a new member of the forespore-expressed sigmaG-regulon from Bacillus subtilis. Gene 184:133-40 (1997). [Pubmed] Sekiguchi J, Akeo K, Yamamoto H, Khasanov F.K, Alonso J.C, Kuroda A. Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis. . Journal of bacteriology 177:5582-9 (1995). [Pubmed] Schuch R, Piggot P.J. The dacF-spoIIA operon of Bacillus subtilis, encoding sigma F, is autoregulated. Journal of bacteriology 176:4104-10 (1994). [Pubmed] Feavers I.M, Foulkes J, Setlow B, Sun D, Nicholson W, Setlow P, Moir A. The regulation of transcription of the gerA spore germination operon of Bacillus subtilis. Molecular microbiology 4:275-82 (1990). [Pubmed] Corfe B.M, Moir A, Popham D, Setlow P. Analysis of the expression and regulation of the gerB spore germination operon of Bacillus subtilis 168. Microbiology (Reading, England) 140 ( Pt 11):3079-83 (1994). [Pubmed] Kemp E.H, Sammons R.L, Moir A, Sun D, Setlow P. Analysis of transcriptional control of the gerD spore germination gene of Bacillus subtilis 168. Journal of bacteriology 173:4646-52 (1991). [Pubmed] Igarashi T, Setlow P. Transcription of the Bacillus subtilis gerK operon, which encodes a spore germinant receptor, and comparison with that of operons encoding other germinant receptors. Journal of bacteriology 188:4131-6 (2006). [Pubmed] Rather P.N, Moran C.P. Compartment-specific transcription in Bacillus subtilis: identification of the promoter for gdh. Journal of bacteriology 170:5086-92 (1988). [Pubmed] Sussman M.D, Setlow P. Cloning, nucleotide sequence, and regulation of the Bacillus subtilis gpr gene, which codes for the protease that initiates degradation of small, acid-soluble proteins during spore germination. Journal of bacteriology 173:291-300 (1991). [Pubmed] Sun D.X, Cabrera-Martinez R.M, Setlow P. Control of transcription of the Bacillus subtilis spoIIIG gene, which codes for the forespore-specific transcription factor sigma G. Journal of bacteriology 173:2977-84 (1991). [Pubmed] Moriyama R, Fukuoka H, Miyata S, Kudoh S, Hattori A, Kozuka S, Yasuda Y, Tochikubo K, Makino S. Expression of a germination-specific amidase, SleB, of Bacilli in the forespore compartment of sporulating cells and its localization on the exterior side of the cortex in dormant spores. Journal of bacteriology 181:2373-8 (1999). [Pubmed] Pedraza-Reyes M, Gutiérrez-Corona F, Nicholson W.L. Temporal regulation and forespore-specific expression of the spore photoproduct lyase gene by sigma-G RNA polymerase during Bacillus subtilis sporulation. Journal of bacteriology 176:3983-91 (1994). [Pubmed] Pedraza-Reyes M, Gutiérrez-Corona F, Nicholson W.L. Spore photoproduct lyase operon (splAB) regulation during Bacillus subtilis sporulation: modulation of splB-lacZ fusion expression by P1 promoter mutations and by an in-frame deletion of splA. Current microbiology 34:133-7 (1997). [Pubmed] Gomez M, Cutting S.M. Expression of the Bacillus subtilis spoIVB gene is under dual sigma F/sigma G control. Microbiology (Reading, England) 142 ( Pt 12):3453-7 (1996). [Pubmed] Moldover B, Piggot P.J, Yudkin M.D. Identification of the promoter and the transcriptional start site of the spoVA operon of Bacillus subtilis and Bacillus licheniformis. Journal of general microbiology 137:527-31 (1991). [Pubmed] Sun D.X, Stragier P, Setlow P. Identification of a new sigma-factor involved in compartmentalized gene expression during sporulation of Bacillus subtilis. Genes & development 3:141-9 (1989). [Pubmed] Bagyan I, Hobot J, Cutting S. A compartmentalized regulator of developmental gene expression in Bacillus subtilis. Journal of bacteriology 178:4500-7 (1996). [Pubmed] Nicholson W.L, Sun D.X, Setlow B, Setlow P. Promoter specificity of sigma G-containing RNA polymerase from sporulating cells of Bacillus subtilis: identification of a group of forespore-specific promoters. Journal of bacteriology 171:2708-18 (1989). [Pubmed] Fajardo-Cavazos P, Tovar-Rojo F, Setlow P. Effect of promoter mutations and upstream deletions on the expression of genes coding for small, acid-soluble spore proteins of Bacillus subtilis. Journal of bacteriology 173:2011-6 (1991). [Pubmed] Stephens M.A, Lang N, Sandman K, Losick R. A promoter whose utilization is temporally regulated during sporulation in Bacillus subtilis. Journal of molecular biology 176:333-48 (1984). [Pubmed] Bagyan I, Setlow B, Setlow P. New small, acid-soluble proteins unique to spores of Bacillus subtilis: identification of the coding genes and regulation and function of two of these genes. Journal of bacteriology 180:6704-12 (1998). [Pubmed] Cabrera-Hernandez A, Sanchez-Salas J.L, Paidhungat M, Setlow P. Regulation of four genes encoding small, acid-soluble spore proteins in Bacillus subtilis. Gene 232:1-10 (1999). [Pubmed] Cabrera-Hernandez A, Setlow P. Analysis of the regulation and function of five genes encoding small, acid-soluble spore proteins of Bacillus subtilis. Gene 248:169-81 (2000). [Pubmed] Wang S.T, Setlow B, Conlon E.M, Lyon J.L, Imamura D, Sato T, Setlow P, Losick R, Eichenberger P. The forespore line of gene expression in Bacillus subtilis. Journal of molecular biology 358:16-37 (2006). [Pubmed] Bagyan I, Noback M, Bron S, Paidhungat M, Setlow P. Characterization of yhcN, a new forespore-specific gene of Bacillus subtilis. Gene 212:179-88 (1998). [Pubmed] Imamura D, Kobayashi K, Sekiguchi J, Ogasawara N, Takeuchi M, Sato T. spoIVH (ykvV), a requisite cortex formation gene, is expressed in both sporulating compartments of Bacillus subtilis. Journal of bacteriology 186:5450-9 (2004). [Pubmed] Urtiz-Estrada N, Salas-Pacheco J.M, Yasbin R.E, Pedraza-Reyes M. Forespore-specific expression of Bacillus subtilis yqfS, which encodes type IV apurinic/apyrimidinic endonuclease, a component of the base excision repair pathway. Journal of bacteriology 185:340-8 (2003). [Pubmed] Pedersen L.B, Ragkousi K, Cammett T.J, Melly E, Sekowska A, Schopick E, Murray T, Setlow P. Characterization of ywhE, which encodes a putative high-molecular-weight class A penicillin-binding protein in Bacillus subtilis. Gene 246:187-96 (2000). [Pubmed] |
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