DNA Binding Motif

						

			
Accessions: MA2009.1 (JASPAR 2024)

			
Names: NAC010
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 24
Consensus: rTaaCTTGTkvcACAAGtwAccww
Weblogo: 
PSSM: P0      A      C      G      T
01    225    105    309    171      r
02    189     29     27    565      T
03    523      7     83    197      a
04    495     67    122    126      a
05      8    796      0      6      C
06      4      1     79    726      T
07      1      1      1    807      T
08     71     96    626     17      G
09    112     67     27    604      T
10    191    125    290    204      k
11    209    207    205    189      v
12    186    322    108    194      c
13    594     30     71    115      A
14     17    634     87     72      C
15    802      1      3      4      A
16    709     97      3      1      A
17     10      1    792      7      G
18    144    100     64    502      t
19    235     72     10    493      w
20    669     13     14    114      A
21    112    495     59    144      c
22    130    436     77    167      c
23    232    121    142    315      w
24    266    158    119    267      w
Type: Heterodimer
Binding TFs: F4HY61 (No apical meristem (NAM) protein)
F4HY61
Binding Sites: MA2009.1.1
MA2009.1.10
MA2009.1.11
MA2009.1.12
MA2009.1.13
MA2009.1.14
MA2009.1.15
MA2009.1.16
MA2009.1.17
MA2009.1.18
MA2009.1.19
MA2009.1.2
MA2009.1.20
MA2009.1.3
MA2009.1.4
MA2009.1.5
MA2009.1.6
MA2009.1.7
MA2009.1.8
MA2009.1.9
			
Publications: Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.