DNA Binding Motif

						

			
Accessions: NrdR (RegulonDB 7.5)

			
Names: NrdR
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 17
Consensus: cACwAyATmTwGsrktk
Weblogo: 
PSSM: P0      A      C      G      T
01      1      4      0      1      c
02      6      0      0      0      A
03      0      6      0      0      C
04      3      0      0      3      w
05      5      1      0      0      A
06      0      2      0      4      y
07      6      0      0      0      A
08      0      0      0      6      T
09      4      2      0      0      m
10      0      0      0      6      T
11      4      0      0      2      w
12      0      0      6      0      G
13      1      2      2      1      s
14      3      1      2      0      r
15      1      0      2      3      k
16      1      1      1      3      t
17      0      0      2      4      k
Binding TFs: ECK120005767 (ATP cone domain)
Binding Sites: ECK120033054
ECK120033056
ECK120033058
ECK120033060
ECK120033062
ECK120033064
			
	
			


			

				

				
				
				
				

			

			

		

	
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