DNA Binding Motif

						

			
Accessions: MA1227.2 (JASPAR 2024)

			
Names: ERF027
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: hwtyrCCGACAwwww
Weblogo: 
PSSM: P0      A      C      G      T
01   2281   2065   1253   2566      h
02   2124   1440   1886   2715      w
03   1537   1971    999   3658      t
04   1018   2217    799   4131      y
05   2993    257   4656    259      r
06     59   7829     39    238      C
07     49   8069     15     32      C
08     38     30   8067     30      G
09   7473    249     83    360      A
10     27   8089     22     27      C
11   7176    100    562    327      A
12   2884   1583   1063   2635      w
13   2750   1629   1362   2424      w
14   2824   1225   1823   2293      w
15   2512   1635   1448   2570      w
Type: Heterodimer
Binding TFs: Q38Q39 (AP2 domain)
Q38Q39
Binding Sites: MA1227.2.1
MA1227.2.10
MA1227.2.11
MA1227.2.12
MA1227.2.13
MA1227.2.14
MA1227.2.15
MA1227.2.16
MA1227.2.17
MA1227.2.18
MA1227.2.19
MA1227.2.2
MA1227.2.20
MA1227.2.3
MA1227.2.4
MA1227.2.5
MA1227.2.6
MA1227.2.7
MA1227.2.8
MA1227.2.9
			
Publications: Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.