DNA Binding Motif

						

			
Accessions: ETV2_SOX15_1 (HumanTF2 1.0)

			
Names: ETV2_SOX15
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 20
Consensus: rcCGGAWgtrvgkbywTTGT
Weblogo: 
PSSM: P0      A      C      G      T
01    441     85    342    127      r
02    122    551    231     60      c
03     44    782     28     31      C
04      6      5    782      0      G
05      0      9    782      2      G
06    782      0     11      4      A
07    782     21      0    289      W
08    192     51    525     14      g
09     68    181     36    497      t
10    225     84    344    128      r
11    257    213    211    101      v
12    186    159    284    153      g
13     79    144    253    306      k
14      8    349    224    200      b
15    106    401     75    381      y
16    518     24     63    265      w
17    116     71     93    782      T
18     41     43     52    782      T
19    152     89    782     77      G
20     83     41     38    782      T
Type: Heterodimer
Binding TFs: SOX15_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
ETV2_TF1 (Ets-domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.