DNA Binding Motif

						

			
Accessions: MA1147.2 (JASPAR 2024)

			
Names: NR4A2::RXRA
Organisms: Homo sapiens, Rattus norvegicus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SMiLE-seq
Length: 13
Consensus: rGGTCrtTGACCy
Weblogo: 
PSSM: P0      A      C      G      T
01    498    124    348     29      r
02     20     11    924     46      G
03     51      7    804    139      G
04     46    134    128    691      T
05      7    824     31    138      C
06    592     38    343     27      r
07    248     60     87    604      t
08      2     69      5    924      T
09     70     82    836     12      G
10    926     54     17      3      A
11    157    830      2     11      C
12     40    937      4     20      C
13      5    535     23    437      y
Type: Heterodimer
Binding TFs: P43354 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
P43354
			
Publications: Perlmann T., Jansson L. A novel pathway for vitamin A signaling mediated by RXR heterodimerization with NGFI-B and NURR1. Genes Dev. 9:769-782 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.