DNA Binding Motif

						

			
Accessions: PRDM4_methyl_1 (HT-SELEX2 May2017)

			
Names: PRDM4
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: yrRCrGTTTCrAGGcycCCC
Weblogo: 
PSSM: P0      A      C      G      T
01   1478  28168   4449  19475      y
02  19913     51  29978    902      r
03  14950     11  35043    482      R
04    277  49779     51    539      C
05  20252      6  25752   8267      r
06      5      0  50292      0      G
07      0      8      0  50294      T
08      0     55    424  49848      T
09      0      6      0  50311      T
10      1  49816      9    778      C
11  26364   1367  21633   2491      r
12  50192      0      0    102      A
13     11    143  49885    351      G
14   3594   1034  35479  11959      G
15   7001  32038  12037   6147      c
16   4944  16201   2678  31794      y
17   7962  23383   8731  10220      c
18   6743  42355   3052    975      C
19      0  49922      5    421      C
20   1695  49737   1242    582      C
Binding TFs: PRDM4 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc-finger domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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