DNA Binding Motif
| Accessions: | MA1619.1 (JASPAR 2024) |
| Names: | Ptf1A, Ptf1a(var.2) |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 12 |
| Consensus: | rmaCAGCTGtky |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1869 1803 1974 1607 r 02 1978 2430 1629 1216 m 03 4346 1070 1308 529 a 04 49 7149 28 27 C 05 7119 41 65 28 A 06 34 307 6689 223 G 07 224 6697 299 33 C 08 26 66 40 7121 T 09 27 27 7150 49 G 10 535 1312 1065 4341 t 11 1221 1632 2426 1974 k 12 1602 1977 1803 1871 y |
| Type: | Heterodimer |
| Binding TFs: | Q9QX98 (Helix-loop-helix DNA-binding domain) Q9QX98 |
| Binding Sites: | MA1619.1.1 / MA1619.1.2 MA1619.1.10 / MA1619.1.8 MA1619.1.11 / MA1619.1.13 / MA1619.1.15 / MA1619.1.5 / MA1619.1.7 / MA1619.1.9 MA1619.1.10 / MA1619.1.12 / MA1619.1.14 / MA1619.1.16 / MA1619.1.6 / MA1619.1.8 MA1619.1.11 / MA1619.1.13 / MA1619.1.15 / MA1619.1.17 MA1619.1.12 / MA1619.1.14 / MA1619.1.16 / MA1619.1.18 MA1619.1.17 / MA1619.1.19 MA1619.1.18 / MA1619.1.20 MA1619.1.1 / MA1619.1.3 MA1619.1.2 / MA1619.1.4 MA1619.1.3 / MA1619.1.5 MA1619.1.4 / MA1619.1.6 MA1619.1.7 / MA1619.1.9 MA1619.1.19 MA1619.1.20 |
| Publications: | Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE. Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Mol Cell Biol 33:3166-79 (2013). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.