DNA Binding Motif

						

			
Accessions: 3w6v_A (3D-footprint 20231221)

			
Names: AdpA
Organisms: Streptomyces griseus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA
Length: 6
Consensus: cCGcCA
Weblogo: 
PSSM: P0      A      C      G      T
01     16     45     19     16      c
02      4     81      4      7      C
03      3      3     85      5      G
04     12     60     12     12      c
05      0     96      0      0      C
06     78      6      6      6      A
Binding TFs: 3w6v_A (Bacterial regulatory helix-turn-helix proteins, AraC family, Helix-turn-helix domain)
Binding Sites: 3w6v_B
3w6v_C
			
Publications: Yao M.D, Ohtsuka J, Nagata K, Miyazono K, Zhi Y, Ohnishi Y, Tanokura M. Complex structure of the DNA-binding domain of AdpA, the global transcription factor in Streptomyces griseus, and a target duplex DNA reveals the structural basis of its tolerant DNA sequence specificity. The Journal of biological chemistry 288:31019-29 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.