DNA Binding Motif

						

			
Accessions: SIX1_methyl_1 (HT-SELEX2 May2017)

			
Names: SIX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: vcgTATCryk
Weblogo: 
PSSM: P0      A      C      G      T
01    742    540    603    174      v
02    650   1436    622    455      c
03    537    448   1521    260      g
04      0     12    424   2058      T
05   2058    196     41      0      A
06      0      0      7   2058      T
07    253   2058      0    449      C
08   1074    277    984    241      r
09    398    964    671   1094      y
10    428    486    596    547      k
Binding TFs: SIX1 (Homeobox domain, Homeobox KN domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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