DNA Binding Motif

						

			
Accessions: 4aa6_EF (3D-footprint 20231221)

			
Names: ESTROGEN RECEPTOR
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
Length: 13
Consensus: AGTCAnnnTGACC
Weblogo: 
PSSM: P0      A      C      G      T
01     75      7      7      7      A
02      0      0     96      0      G
03      7      9      7     73      T
04      0     96      0      0      C
05     73      7      7      9      A
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09      7      9      7     73      T
10      0      0     96      0      G
11     96      0      0      0      A
12      0     96      0      0      C
13      0     96      0      0      C
Type: Heterodimer
Binding TFs: 4aa6_E (Zinc finger, C4 type (two domains))
4aa6_F (Zinc finger, C4 type (two domains))
Binding Sites: 4aa6_G
4aa6_H
			
Publications: Schwabe J.W, Chapman L, Rhodes D. The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation. Structure (London, England : 1993) 3:201-13 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.