DNA Binding Motif
| Accessions: | MA0205.3 (JASPAR 2024) |
| Names: | Trl |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 9 |
| Consensus: | rAGAGAGAr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 4107 597 1902 252 r 02 6613 47 44 154 A 03 91 54 6535 178 G 04 6743 21 44 50 A 05 10 38 6783 27 G 06 6603 182 45 28 A 07 141 29 6638 50 G 08 5105 845 495 413 A 09 1888 621 3800 549 r |
| Type: | Heterodimer |
| Binding TFs: | Q08605 (BTB/POZ domain, GAGA factor) Q08605 |
| Binding Sites: | MA0205.3.1 / MA0205.3.19 MA0205.3.10 MA0205.3.11 / MA0205.3.16 MA0205.3.12 MA0205.3.13 MA0205.3.14 MA0205.3.15 MA0205.3.17 MA0205.3.18 MA0205.3.2 / MA0205.3.20 / MA0205.3.3 MA0205.3.4 / MA0205.3.9 MA0205.3.5 MA0205.3.6 MA0205.3.7 MA0205.3.8 |
| Publications: | Omelina ES, Baricheva EM, Oshchepkov DY, Merkulova TI. Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes. Comput Biol Chem 35:363-70 (2011). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.