DNA Binding Motif

						

			
Accessions: RARG_full_2 (HumanTF 1.0)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 18
Consensus: rAGGTCAAsyArAGKTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    117      4    100      6      r
02    245      4     16      2      A
03      0      0    185      4      G
04      0      1    182      7      G
05      1      0      1    205      T
06      1    348      0      0      C
07    265      0      6      1      A
08    193      7     38      8      A
09      9     58    106     39      s
10      6    108     34    101      y
11    229     20     18     54      A
12    134      6     87      4      r
13    203      9     66      1      A
14      1      2    172      1      G
15      0      2    138     49      K
16      1      5      3    204      T
17      6    369      2     19      C
18    273      1      8      5      A
Binding TFs: RARG_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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