DNA Binding Motif

						

			
Accessions: 2han_AB (3D-footprint 20231221)

			
Names: Protein ultraspiracle
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter
Length: 12
Consensus: GGTTCAnTncaC
Weblogo: 
PSSM: P0      A      C      G      T
01      4      9     79      4      G
02      0      0     96      0      G
03      0      0      0     96      T
04      0      0      0     96      T
05      0     96      0      0      C
06     73      4     10      9      A
07     24     24     24     24      n
08      9      9     10     68      T
09     24     24     24     24      n
10     10     64      9     13      c
11     64     22      4      6      a
12      0     96      0      0      C
Type: Heterodimer
Binding TFs: 2han_A (Zinc finger, C4 type (two domains))
2han_B (Zinc finger, C4 type (two domains))
Binding Sites: 2han_C
2han_D
			
Publications: Jakób M, Kołodziejczyk R, Orłowski M, Krzywda S, Kowalska A, Dutko-Gwóźdź J, Gwóźdź T, Kochman M, Jaskólski M, Ozyhar A. Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain. Nucleic acids research 35:2705-18 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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