DNA Binding Motif

						

			
Accessions: SOX8_full_3 (HumanTF 1.0)

			
Names: SOX8
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 17
Consensus: mATCAATTGCAGTGATk
Weblogo: 
PSSM: P0      A      C      G      T
01    121     64      0     15      m
02    200      0      0      0      A
03      0      0      0    200      T
04      0    200      0      0      C
05    200      0      0      0      A
06    200      0      0      0      A
07      0      0      0    200      T
08      0      0     47    152      T
09      6      0    169     25      G
10      0    164      0     36      C
11    200      0      0      0      A
12      0      0    200     32      G
13      0      0      0    200      T
14      0      0    200      0      G
15    200      0      0      0      A
16      6      0      0    200      T
17      6      0     71    123      k
Binding TFs: SOX8_full (HMG (high mobility group) box, Domain of unknown function (DUF1898), Sox developmental protein N terminal )
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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