DNA Binding Motif
Accessions: | retn (DrosophilaTF 1.1) |
Names: | retn |
Organisms: | Drosophila melanogaster |
Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
Length: | 10 |
Consensus: | tyrATTAatm |
Weblogo: | |
PSSM: | P0 A C G T 01 0.2143 0.1667 0.1667 0.4524 t 02 0.2143 0.3571 0.1667 0.2619 y 03 0.5 0 0.5 0 r 04 1 0 0 0 A 05 0.0238 0 0 0.9762 T 06 0.0238 0 0 0.9762 T 07 0.881 0 0.119 0 A 08 0.6667 0.119 0.1429 0.0714 a 09 0.2143 0.119 0.1429 0.5238 t 10 0.2857 0.2619 0.2381 0.2143 m |
Binding TFs: | retn (ARID/BRIGHT DNA binding domain) |
Publications: | Gregory S. L., Kortschak R. D., Kalionis B., Staint R. Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins. Mol. Cell. Biol. 16:792-799 (1996). [Pubmed] |
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