DNA Binding Motif

Accessions: UP00342A_1 (UniPROBE 20160601)
Names: L8084.4, Sfp1, YLR403W, Zinc finger protein SFP1
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: wywrdrAAAAwTTTTyywykg
Weblogo:
PSSM: P0 A C G T
01 0.43 0.16 0.16 0.25 w
02 0.20 0.29 0.19 0.31 y
03 0.29 0.17 0.19 0.34 w
04 0.25 0.22 0.29 0.24 r
05 0.35 0.08 0.30 0.27 d
06 0.53 0.04 0.34 0.08 r
07 0.78 0.07 0.07 0.07 A
08 0.90 0.04 0.05 0.02 A
09 0.90 0.01 0.05 0.04 A
10 0.86 0.01 0.04 0.09 A
11 0.54 0.03 0.02 0.41 w
12 0.09 0.04 0.01 0.86 T
13 0.04 0.05 0.01 0.90 T
14 0.02 0.05 0.04 0.90 T
15 0.07 0.07 0.07 0.78 T
16 0.13 0.41 0.09 0.38 y
17 0.08 0.35 0.10 0.46 y
18 0.33 0.20 0.17 0.31 w
19 0.12 0.43 0.15 0.30 y
20 0.22 0.08 0.37 0.32 k
21 0.22 0.17 0.41 0.21 g
Binding TFs: UP00342A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: AAAAATTT
AAAAAAAC
AAAAAAAT
AAAAAATA
AAAAAATT
AAAATTTT
AAATTTTC
AGAAAAAA
ATTTTTTC
CAAAAAAA
CGAAAAAA
CTTTTTTC
GAAAAAAA
GGAAAAAA
GTAAAAAA
GTGAAAAA
TAAAAAAA
TGAAAAAA
AGGAAAAA
GAAAAAAC
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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