DNA Binding Motif

						

			
Accessions: UP00342A_1 (UniPROBE 20160601)

			
Names: L8084.4, Sfp1, YLR403W, Zinc finger protein SFP1
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: wywrdrAAAAwTTTTyywykg
Weblogo: 
PSSM: P0      A      C      G      T
01   0.43   0.16   0.16   0.25      w
02   0.20   0.29   0.19   0.31      y
03   0.29   0.17   0.19   0.34      w
04   0.25   0.22   0.29   0.24      r
05   0.35   0.08   0.30   0.27      d
06   0.53   0.04   0.34   0.08      r
07   0.78   0.07   0.07   0.07      A
08   0.90   0.04   0.05   0.02      A
09   0.90   0.01   0.05   0.04      A
10   0.86   0.01   0.04   0.09      A
11   0.54   0.03   0.02   0.41      w
12   0.09   0.04   0.01   0.86      T
13   0.04   0.05   0.01   0.90      T
14   0.02   0.05   0.04   0.90      T
15   0.07   0.07   0.07   0.78      T
16   0.13   0.41   0.09   0.38      y
17   0.08   0.35   0.10   0.46      y
18   0.33   0.20   0.17   0.31      w
19   0.12   0.43   0.15   0.30      y
20   0.22   0.08   0.37   0.32      k
21   0.22   0.17   0.41   0.21      g
Binding TFs: UP00342A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: AAAAATTT
AAAAAAAC
AAAAAAAT
AAAAAATA
AAAAAATT
AAAATTTT
AAATTTTC
AGAAAAAA
ATTTTTTC
CAAAAAAA
CGAAAAAA
CTTTTTTC
GAAAAAAA
GGAAAAAA
GTAAAAAA
GTGAAAAA
TAAAAAAA
TGAAAAAA
AGGAAAAA
GAAAAAAC
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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