DNA Binding Motif

						

			
Accessions: SOX4_methyl_1 (HT-SELEX2 May2017)

			
Names: SOX4
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: raACAAwGrr
Weblogo: 
PSSM: P0      A      C      G      T
01   6040   3187   7431   4268      r
02   7431   1402   2265    804      a
03   7431      0      0     11      A
04      0   7431    105    138      C
05   7431      0      0      0      A
06   7431      0     11      0      A
07   7431     82     81   3676      w
08   1861    139   7431    188      G
09   3592   1854   3839    362      r
10   2704   1857   2102    768      r
Binding TFs: SOX4 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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