DNA Binding Motif

						

			
Accessions: UN0367.1 (JASPAR 2024), MA2042.1 (JASPAR 2024)

			
Names: MYB58
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 17
Consensus: whytyCACCAACCmcwh
Weblogo: 
PSSM: P0      A      C      G      T
01    563    303    205    480      w
02    406    402    311    432      h
03    335    590    202    424      y
04    294    310    165    782      t
05    163    861     98    429      y
06     35   1368     14    134      C
07   1500      8     21     22      A
08    163   1361     12     15      C
09      9   1520      7     15      C
10   1374     21     23    133      A
11   1440     59     30     22      A
12    209   1291     11     40      C
13     91   1185     35    240      C
14    466    688    138    259      m
15    355    798    105    293      c
16    529    352    213    457      w
17    498    411    234    408      h
Type: Heterodimer
Binding TFs: Q9SA47 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
Q9SA47
Binding Sites: UN0367.1.1
MA2042.1.5 / UN0367.1.10
UN0367.1.11
UN0367.1.12
MA2042.1.6 / UN0367.1.13
MA2042.1.7 / UN0367.1.14
UN0367.1.15
MA2042.1.9 / UN0367.1.16
UN0367.1.17
UN0367.1.18
UN0367.1.19
UN0367.1.2
MA2042.1.10 / UN0367.1.20
MA2042.1.1 / UN0367.1.3
UN0367.1.4
UN0367.1.5
MA2042.1.2 / UN0367.1.6
UN0367.1.7
MA2042.1.3 / UN0367.1.8
MA2042.1.4 / UN0367.1.9
MA2042.1.11
MA2042.1.12
MA2042.1.13
MA2042.1.14
MA2042.1.15
MA2042.1.16
MA2042.1.17
MA2042.1.18
MA2042.1.19
MA2042.1.20
MA2042.1.8
			
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.