DNA Binding Motif

						

			
Accessions: MA1225.1 (JASPAR 2024), M0105 (AthalianaCistrome v4_May2016)

			
Names: ERF5, ERF5.DAP, T21856;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ccrcCgCCGCCGCCr
Weblogo: 
PSSM: P0      A      C      G      T
01     59    369     38    114      c
02     88    385     14     93      c
03    214     42    180    144      r
04     32    360     72    116      c
05     58    494      5     23      C
06     81      0    370    129      g
07      3    529     32     16      C
08     16    564      0      0      C
09     68      0    503      9      G
10      4    537     20     19      C
11      4    576      0      0      C
12     73      0    465     42      G
13      3    418     17    142      C
14     55    424     29     72      C
15    238     17    219    106      r
Type: Heterodimer
Binding TFs: O80341 / T21856 (AP2 domain)
O80341
Binding Sites: MA1225.1.1
MA1225.1.4
MA1225.1.12
MA1225.1.18
MA1225.1.20
MA1225.1.2
MA1225.1.3
MA1225.1.10
MA1225.1.11
MA1225.1.13
MA1225.1.14
MA1225.1.15
MA1225.1.16
MA1225.1.17
MA1225.1.19
MA1225.1.5
MA1225.1.6
MA1225.1.7
MA1225.1.8
MA1225.1.9
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.