DNA Binding Motif
| Accessions: | UP00537A_2 (UniPROBE 20160601) |
| Names: | anon-EST:CL2d4, CG4677, Dmel\CG4677, gfl, Lame duck, Lmd, minc |
| Organisms: | Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | kymwtvyAGGgGGTmswkdtga |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.04 0.43 0.32 k 02 0.06 0.47 0.09 0.38 y 03 0.28 0.30 0.22 0.21 m 04 0.30 0.22 0.22 0.25 w 05 0.14 0.16 0.11 0.58 t 06 0.30 0.26 0.35 0.09 v 07 0.14 0.44 0.17 0.26 y 08 0.82 0.05 0.03 0.10 A 09 0.06 0.01 0.87 0.06 G 10 0.02 0 0.96 0.02 G 11 0.22 0 0.63 0.14 g 12 0.01 0.01 0.96 0.02 G 13 0.02 0.01 0.94 0.04 G 14 0.01 0.08 0.03 0.89 T 15 0.26 0.68 0.05 0.02 m 16 0.10 0.25 0.41 0.24 s 17 0.32 0.21 0.11 0.36 w 18 0.08 0.21 0.33 0.38 k 19 0.29 0.11 0.34 0.26 d 20 0.17 0.09 0.16 0.58 t 21 0.18 0.15 0.49 0.17 g 22 0.55 0.15 0.19 0.11 a |
| Binding TFs: | UP00537A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | ACCCCCCA ACCCCCCC ACCCCCCG AGACCCCC AGGGGGTC CACCCCCC CAGGGGGG CCCCCCAC CCCCCCCA CCCCCCCC CCCCCCCG CCCCCCGC CCCCCCGG GACCCCCA GACCCCCC GCCCCCCC GGACCCCC GGCCCCCC GGGGGGTA GGGGGTCA |
| Publications: | Busser BW, Huang D, Rogacki KR, Lane EA, Shokri L, Ni T, Gamble CE, Gisselbrecht SS, Zhu J, Bulyk ML, Ovcharenko I, Michelson AM. Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network. Proc Natl Acad Sci U S A 109:20768-73 (2012). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.