DNA Binding Motif

						

			
Accessions: UP00319A_1 (UniPROBE 20160601)

			
Names: Gat3, Protein GAT3, YLR013W
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 20
Consensus: baaatbRGATCTACragctg
Weblogo: 
PSSM: P0      A      C      G      T
01   0.17   0.27   0.27   0.29      b
02   0.60   0.22   0.10   0.08      a
03   0.52   0.16   0.18   0.15      a
04   0.45   0.13   0.18   0.23      a
05   0.25   0.19   0.11   0.46      t
06   0.03   0.29   0.38   0.30      b
07   0.71   0.01   0.27   0.01      R
08   0.02      0   0.97      0      G
09   0.97      0      0   0.03      A
10   0.16      0      0   0.84      T
11      0   0.98      0   0.01      C
12      0   0.07      0   0.93      T
13   0.97   0.01   0.02      0      A
14   0.08   0.88   0.02   0.02      C
15   0.47   0.16   0.31   0.06      r
16   0.45   0.17   0.18   0.21      a
17   0.24   0.16   0.47   0.13      g
18   0.13   0.44   0.22   0.22      c
19   0.22   0.23   0.14   0.41      t
20   0.19   0.12   0.50   0.19      g
Binding TFs: UP00319A (GATA zinc finger)
Binding Sites: AAGATCTA
AGAACTAC
AGATCTAA
AGATCTAC
AGATCTAG
AGATCTAT
AGATCTCA
AGATCTCC
AGATCTGG
CAGATCTA
CGGATCTA
CGTAGATC
GAGATCTA
GAGATCTC
GATCTACA
GATCTACC
GGAACTAC
GGATCTAC
TAGATCCA
TAGATCTA
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.