DNA Binding Motif

						

			
Accessions: MA0650.3 (JASPAR 2024)

			
Names: Hoxa13
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 12
Consensus: wgCCAATAAAaw
Weblogo: 
PSSM: P0      A      C      G      T
01   5585   3314   3868   4481      w
02   4302   4183   4557   4206      g
03   1442  12600   1889   1317      C
04   1273  14100     77   1798      C
05  14069   1594    146   1439      A
06  15410    243    666    929      A
07    105    249    232  16662      T
08  15804    205    407    832      A
09  16813    125     98    212      A
10  16550    306    145    247      A
11   7635   3220   2749   3644      a
12   5256   4214   3026   4752      w
Type: Heterodimer
Binding TFs: Q62424 (Homeobox domain, Hox protein A13 N terminal)
Q62424
Binding Sites: MA0650.3.1 / MA0650.3.4
MA0650.3.10 / MA0650.3.18
MA0650.3.11 / MA0650.3.19
MA0650.3.12
MA0650.3.13
MA0650.3.14
MA0650.3.15
MA0650.3.16
MA0650.3.17
MA0650.3.18
MA0650.3.19
MA0650.3.2 / MA0650.3.5
MA0650.3.20
MA0650.3.10 / MA0650.3.3
MA0650.3.12 / MA0650.3.4
MA0650.3.13 / MA0650.3.5
MA0650.3.6
MA0650.3.14 / MA0650.3.7
MA0650.3.15 / MA0650.3.8
MA0650.3.17 / MA0650.3.9
MA0650.3.1 / MA0650.3.2
MA0650.3.11
MA0650.3.16
MA0650.3.20
MA0650.3.3
MA0650.3.6
MA0650.3.7
MA0650.3.8
MA0650.3.9
			
Publications: Knosp W. M., Saneyoshi C., Shou S., Bachinger H. P., Stadler H. S. Elucidation, quantitative refinement, and in vivo utilization of the HOXA13 DNA binding site.. J. Biol. Chem. 282:6843-6853 (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.