DNA Binding Motif

						

			
Accessions: 1if1_AB (3D-footprint 20231221)

			
Names: PROTEIN (INTERFERON REGULATORY FACTOR 1)
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA
Length: 14
Consensus: TGGAnnTACtTACA
Weblogo: 
PSSM: P0      A      C      G      T
01      3      0      4     89      T
02      0      0     96      0      G
03      6      3     74     13      G
04     96      0      0      0      A
05     24     24     24     24      n
06     24     24     24     24      n
07      0      4      0     92      T
08     92      0      4      0      A
09      5     75     10      6      C
10      4     10     17     65      t
11      0      0      0     96      T
12     77      3      3     13      A
13      0     96      0      0      C
14     85      3      5      3      A
Type: Heterodimer
Binding TFs: 1if1_A (Interferon regulatory factor transcription factor)
1if1_B (Interferon regulatory factor transcription factor)
Binding Sites: 1if1_D
			
Publications: ESCALANTE C.R., YIE J., THANOS D., AGGARWAL A.K. Structure of IRF-1 with bound DNA reveals determinants of interferon regulation.. Nature 391:103-106 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.