DNA Binding Motif
| Accessions: | MA0782.2 (JASPAR 2024) |
| Names: | PKNOX1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 15 |
| Consensus: | twTGAgTGACAGctr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9811 9503 9599 11050 t 02 10245 9828 9535 10355 w 03 5222 1625 3322 29794 T 04 1654 1160 36106 1043 G 05 36759 678 1330 1196 A 06 2325 4123 26182 7333 g 07 1140 878 1027 36918 T 08 555 1004 37713 691 G 09 36374 410 2459 720 A 10 651 37846 580 886 C 11 33982 944 2408 2629 A 12 2745 4759 27367 5092 G 13 8452 16341 9128 6042 c 14 8617 9386 9060 12900 t 15 10522 9268 10296 9877 r |
| Type: | Heterodimer |
| Binding TFs: | P55347 (Homeobox domain, Homeobox KN domain) P55347 |
| Binding Sites: | MA0782.2.1 MA0782.2.10 MA0782.2.11 / MA0782.2.9 MA0782.2.11 / MA0782.2.12 MA0782.2.13 MA0782.2.14 MA0782.2.15 MA0782.2.13 / MA0782.2.16 MA0782.2.17 MA0782.2.14 / MA0782.2.18 MA0782.2.19 MA0782.2.1 / MA0782.2.2 MA0782.2.15 / MA0782.2.20 MA0782.2.2 / MA0782.2.3 MA0782.2.4 MA0782.2.5 / MA0782.2.6 MA0782.2.6 MA0782.2.7 MA0782.2.7 / MA0782.2.8 MA0782.2.9 MA0782.2.10 MA0782.2.12 MA0782.2.16 MA0782.2.17 MA0782.2.18 MA0782.2.19 MA0782.2.20 MA0782.2.3 MA0782.2.5 MA0782.2.8 |
| Publications: | Penkov D, Mateos San Martín D, Fernandez-Díaz LC, Rosselló CA, Torroja C, Sánchez-Cabo F, Warnatz HJ, Sultan M, Yaspo ML, Gabrieli A, Tkachuk V, Brendolan A, Blasi F, Torres M. Analysis of the DNA-binding profile and function of TALE homeoproteins reveals their specialization and specific interactions with Hox genes/proteins. Cell Rep 3:1321-33 (2013). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.