DNA Binding Motif
| Accessions: | UP00304A_1 (UniPROBE 20160601) |
| Names: | Pre-rRNA-processing protein SRD1, Srd1, Suppressor of rRNA-processing defect protein 1, YCR018C, YCR18C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | swmdygRGATCTACamrcws |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.30 0.28 0.18 s 02 0.35 0.18 0.21 0.26 w 03 0.29 0.28 0.24 0.19 m 04 0.33 0.10 0.30 0.26 d 05 0.13 0.26 0.22 0.38 y 06 0.17 0.24 0.38 0.21 g 07 0.73 0.01 0.26 0 R 08 0.02 0 0.98 0 G 09 0.99 0 0 0.01 A 10 0.05 0 0 0.94 T 11 0 0.99 0 0.01 C 12 0 0.02 0 0.98 T 13 0.94 0.04 0.02 0 A 14 0.01 0.96 0.01 0.02 C 15 0.65 0.08 0.19 0.08 a 16 0.43 0.27 0.17 0.12 m 17 0.42 0.18 0.25 0.15 r 18 0.19 0.34 0.24 0.22 c 19 0.28 0.18 0.24 0.30 w 20 0.14 0.30 0.38 0.19 s |
| Binding TFs: | UP00304A (GATA zinc finger) |
| Binding Sites: | AAGATCTA AGAACTAC AGATCTAA AGATCTAC AGATCTAT AGATCTCA AGATCTCC AGATCTCG AGATCTGC CAGATCTA CGGAGATA CGTAGATC GAGATCTA GAGATCTC GATCTACA GGAACTAC GGATCTAC TAGATCCA TAGATCTA TCTTGGCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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