DNA Binding Motif

						

			
Accessions: MA1787.1 (JASPAR 2024)

			
Names: NAC047
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wwhwaYACGtmwcyt
Weblogo: 
PSSM: P0      A      C      G      T
01    257    127     70    547      w
02    278    202    148    372      w
03    262    258    170    310      h
04    260    207    165    368      w
05    552 88.333    122    238      a
06  6.667    708 33.333    252      Y
07   1000      0      0      0      A
08      0    995      0      5      C
09  1.667     10    980  8.333      G
10 41.667    230    152    577      t
11    522    367      5    107      m
12    652      0      0    348      w
13 48.333    640 96.667    215      c
14 66.667    285     45    603      y
15    195    137    167    502      t
Type: Heterodimer
Binding TFs: Q84TD6 (No apical meristem (NAM) protein)
Q84TD6
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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