DNA Binding Motif

						

			
Accessions: MA1926.1 (JASPAR 2024)

			
Names: Usf
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: ahwrrtCACGTGayhwrawa
Weblogo: 
PSSM: P0      A      C      G      T
01    274    246    238    242      a
02    258    259    229    253      h
03    304    199    231    267      w
04    321    163    270    245      r
05    397    121    399     83      r
06    144    212    110    534      t
07     43    878     42     37      C
08    980      6      7      7      A
09      8    955      8     30      C
10     24      9    958      8      G
11      8      8      6    977      T
12     10     18    964      9      G
13    669     73    166     93      a
14     80    424    110    386      y
15    269    272    160    300      h
16    291    234    196    279      w
17    281    232    253    234      r
18    271    238    244    246      a
19    267    243    239    251      w
20    268    245    241    246      a
Type: Heterodimer
Binding TFs: Q4H2N1 (Helix-loop-helix DNA-binding domain)
Q4H2N1
			
Publications: Russo MT, Donizetti A, Locascio A, D'Aniello S, Amoroso A, Aniello F, Fucci L, Branno M. Regulatory elements controlling Ci-msxb tissue-specific expression during Ciona intestinalis embryonic development. Dev Biol 267:517-28 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.