DNA Binding Motif

						

			
Accessions: RXRB_3 (HT-SELEX2 May2017)

			
Names: RXRB
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 15
Consensus: rrGGTCAAAGGTCAh
Weblogo: 
PSSM: P0      A      C      G      T
01   2223    628   3351    549      r
02   3391     83   3360     17      r
03    117     32   6751    105      G
04     50      7   6751   1298      G
05     11     49    260   6751      T
06    115   6751    645   1112      C
07   6751      4    110      2      A
08   6751     24    485    338      A
09   6751     13    730      2      A
10     27      7   6751     38      G
11     10      2   6751   1088      G
12      8     39    221   6751      T
13     95   6751    407    924      C
14   6751     27    970     36      A
15   1932   1933   1013   1872      h
Binding TFs: RXRB (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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