DNA Binding Motif

Accessions: UP00402A_1 (UniPROBE 20160601), UP00402A_2 (UniPROBE 20160601)
Names: C18F3.4, NSY-7, Q4PIU8_CAEEL
Organisms: Caenorhabditis elegans
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: wwtACCTTAACkyy
Weblogo:
PSSM: P0 A C G T
01 0.25 0.08 0.21 0.46 w
02 0.26 0.06 0.10 0.58 w
03 0.20 0.07 0.22 0.50 t
04 0.86 0.05 0.01 0.08 A
05 0.01 0.98 0 0.01 C
06 0 0.97 0.01 0.01 C
07 0 0.05 0.01 0.94 T
08 0.06 0 0 0.93 T
09 0.99 0 0 0.01 A
10 0.87 0.02 0.09 0.02 A
11 0.06 0.72 0.16 0.06 C
12 0.07 0.20 0.47 0.26 k
13 0.19 0.26 0.20 0.34 y
14 0.19 0.36 0.19 0.26 y
Binding TFs: UP00402A
Binding Sites: AACCTTAA
ACCTTAAA
ACCTTAAG
ACTTAAGG
CCCTTAAC
CGCATGCA
CTAAGGTA
CTGCATGC
CTTAAGGA
GACCTTAA
GCATGCAA
GTACCTTA
TAACCTTA
TAAGGTAA
TACCCTAA
TACCTTAA
TGCATGCA
ACCCTAAA
ACCTTAAT
CCTTAACG
Publications: Lesch BJ, Gehrke AR, Bulyk ML, Bargmann CI. Transcriptional regulation and stabilization of left-right neuronal identity in C. elegans. Genes and Development (2009) 23(3):345-58 [Pubmed]

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