DNA Binding Motif

						

			
Accessions: UP00402A_1 (UniPROBE 20160601), UP00402A_2 (UniPROBE 20160601)

			
Names: C18F3.4, NSY-7, Q4PIU8_CAEEL
Organisms: Caenorhabditis elegans
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 14
Consensus: wwtACCTTAACkyy
Weblogo: 
PSSM: P0      A      C      G      T
01   0.25   0.08   0.21   0.46      w
02   0.26   0.06   0.10   0.58      w
03   0.20   0.07   0.22   0.50      t
04   0.86   0.05   0.01   0.08      A
05   0.01   0.98      0   0.01      C
06      0   0.97   0.01   0.01      C
07      0   0.05   0.01   0.94      T
08   0.06      0      0   0.93      T
09   0.99      0      0   0.01      A
10   0.87   0.02   0.09   0.02      A
11   0.06   0.72   0.16   0.06      C
12   0.07   0.20   0.47   0.26      k
13   0.19   0.26   0.20   0.34      y
14   0.19   0.36   0.19   0.26      y
Binding TFs: UP00402A
Binding Sites: AACCTTAA
ACCTTAAA
ACCTTAAG
ACTTAAGG
CCCTTAAC
CGCATGCA
CTAAGGTA
CTGCATGC
CTTAAGGA
GACCTTAA
GCATGCAA
GTACCTTA
TAACCTTA
TAAGGTAA
TACCCTAA
TACCTTAA
TGCATGCA
ACCCTAAA
ACCTTAAT
CCTTAACG
			
Publications: Lesch BJ, Gehrke AR, Bulyk ML, Bargmann CI. Transcriptional regulation and stabilization of left-right neuronal identity in C. elegans. Genes and Development (2009) 23(3):345-58 [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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