DNA Binding Motif

						

			
Accessions: PAX8_methyl_1 (HT-SELEX2 May2017)

			
Names: PAX8
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: ysGTCrCGSwTsAsyGmwya
Weblogo: 
PSSM: P0      A      C      G      T
01    780   1251    720   1424      y
02    770   2085   2090    816      s
03     18     14   4175    412      G
04    584    110     29   4175      T
05     82   4175      4    751      C
06   2531      4   1645     44      r
07     19   4175      6    637      C
08     69      6   4175      2      G
09      9   4175   1445      2      S
10   1988    428    112   2187      w
11     47    935     11   4175      T
12     14   1533   2642     21      s
13   4175      8   1118      8      A
14    874   1275   1152    874      s
15     69   2313     38   1862      y
16    947     24   4175    105      G
17   1817   1433    908     17      m
18   1366    862    647   1299      w
19     67   2601    122   1574      y
20   1391    833   1018    933      a
Binding TFs: PAX8 ('Paired box' domain, Paired-box protein 2 C terminal)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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