DNA Binding Motif
| Accessions: | MA1681.2 (JASPAR 2024) |
| Names: | SRM1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 9 |
| Consensus: | aGATAAGrt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 2050 135 631 334 a 02 11 4 3125 10 G 03 3062 44 19 25 A 04 20 10 13 3107 T 05 3017 21 25 87 A 06 3005 27 41 77 A 07 90 128 2774 158 G 08 913 246 1692 299 r 09 743 264 234 1909 t |
| Type: | Heterodimer |
| Binding TFs: | Q9FNN6 (Myb-like DNA-binding domain) Q9FNN6 |
| Binding Sites: | MA1681.2.10 / MA1681.2.6 MA1681.2.1 MA1681.2.11 / MA1681.2.7 MA1681.2.12 MA1681.2.13 MA1681.2.14 MA1681.2.15 MA1681.2.16 MA1681.2.17 MA1681.2.18 / MA1681.2.19 MA1681.2.2 / MA1681.2.5 MA1681.2.20 MA1681.2.3 MA1681.2.4 MA1681.2.8 MA1681.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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