DNA Binding Motif
| Accessions: | 4m9e_A (3D-footprint 20231221) |
| Names: | Krueppel-like factor 4 |
| Organisms: | Mus musculus |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA |
| Length: | 10 |
| Consensus: | GAGGnnTGGC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 9 9 69 9 G 02 96 0 0 0 A 03 0 0 96 0 G 04 0 0 96 0 G 05 24 24 24 24 n 06 24 24 24 24 n 07 0 0 0 96 T 08 0 0 96 0 G 09 9 9 69 9 G 10 9 69 9 9 C |
| Binding TFs: | 4m9e_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | 4m9e_B 4m9e_C |
| Publications: | Liu Y, Olanrewaju Y.O, Zheng Y, Hashimoto H, Blumenthal R.M, Zhang X, Cheng X. Structural basis for Klf4 recognition of methylated DNA. Nucleic acids research 42:4859-67 (2014). [Pubmed] |
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