DNA Binding Motif

						

			
Accessions: MA1245.1 (JASPAR 2024), M0050 (AthalianaCistrome v4_May2016)

			
Names: AT2G33710, ERF112, At2g33710.DAP, T11242;
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: ccdcCkCCGCCGymr
Weblogo: 
PSSM: P0      A      C      G      T
01     79    308     76    120      c
02    108    329     35    111      c
03    176     49    178    180      d
04     59    342     47    135      c
05     63    475     13     32      C
06     65      8    350    160      k
07      3    456    112     12      C
08      7    573      3      0      C
09     25      0    551      7      G
10      0    572     11      0      C
11      0    583      0      0      C
12     31      0    551      1      G
13      8    372     11    192      y
14    149    350     17     67      m
15    293     11    156    123      r
Type: Heterodimer
Binding TFs: P93007 (AP2 domain)
T11242 (AP2 domain)
P93007
Binding Sites: MA1245.1.2
MA1245.1.9
MA1245.1.10
MA1245.1.13 / MA1245.1.6
MA1245.1.14
MA1245.1.15
MA1245.1.18
MA1245.1.4
MA1245.1.3 / MA1245.1.5
MA1245.1.7
MA1245.1.1
MA1245.1.16
MA1245.1.17
MA1245.1.11
MA1245.1.12
MA1245.1.8
MA1245.1.19
MA1245.1.20
			
Publications: Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.