DNA Binding Motif

						

			
Accessions: M0156 (AthalianaCistrome v4_May2016)

			
Names: BIM2.ampDAP, T00924;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 19
Consensus: rsmrsgtgwrwgkCACGTG
Weblogo: 
PSSM: P0      A      C      G      T
01    164     93    189    139      r
02    123    183    167    112      s
03    168    197     94    126      m
04    216    111    148    110      r
05     80    248    162     95      s
06    133     75    286     91      g
07     81    139    124    241      t
08    124     92    284     85      g
09    167    146    113    159      w
10    190     87    177    131      r
11    150    110    127    198      w
12    136     96    291     62      g
13    115     70    218    182      k
14      0    584      0      1      C
15    581      0      4      0      A
16      0    583      0      2      C
17     23      0    562      0      G
18      0      7      6    572      T
19      1      0    584      0      G
Binding TFs: T00924 (Helix-loop-helix DNA-binding domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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