DNA Binding Motif
| Accessions: | 1nk2_P (3D-footprint 20231221) |
| Names: | HOMEOBOX PROTEIN VND |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | VND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES |
| Length: | 5 |
| Consensus: | GTcaA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 96 0 G 02 0 0 0 96 T 03 13 54 13 16 c 04 54 13 13 16 a 05 96 0 0 0 A |
| Binding TFs: | 1nk2_P (Homeobox domain) |
| Binding Sites: | 1nk2_A 1nk2_B |
| Publications: | Gruschus J.M, Tsao D.H, Wang L.H, Nirenberg M, Ferretti J.A. Interactions of the vnd/NK-2 homeodomain with DNA by nuclear magnetic resonance spectroscopy: basis of binding specificity. Biochemistry 36:5372-80 (1997). [Pubmed] |
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