DNA Binding Motif
| Accessions: | SigH_2 (DBTBS 1.0) |
| Names: | SigH_2 |
| Organisms: | Bacillus subtilis |
| Libraries: | DBTBS 1.0 1 1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed] |
| Length: | 5 |
| Consensus: | CGAAT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.13 0.86 0 0 C 02 0.06 0 0.88 0.06 G 03 1 0 0 0 A 04 1 0 0 0 A 05 0.20 0.05 0 0.75 T |
| Binding TFs: | SigH (Bacterial regulatory proteins, luxR family, Sigma-70 region 2 , Sigma-70, region 4) |
| Binding Sites: | citG_3 dnaG_1 dnaG_2 ftsA_5 hbs_4 kinA_1 lytE_1 minC phrC phrE_2 phrE_3 phrF phrG phrI_2 phrK spo0A_3 spo0F_2 spo0M spoIIAA_1 spoVG_2 spoVS ureA_5 yoxA_2 ytxG_2 yvyD_2 |
| Publications: | Ogura M, Shimane K, Asai K, Ogasawara N, Tanaka T. Binding of response regulator DegU to the aprE promoter is inhibited by RapG, which is counteracted by extracellular PhrG in Bacillus subtilis. Molecular microbiology 49:1685-97 (2003). [Pubmed] Feavers I.M, Price V, Moir A. The regulation of the fumarase (citG) gene of Bacillus subtilis 168. Molecular & general genetics : MGG 211:465-71 (1988). [Pubmed] Tatti K.M, Carter H.L, Moir A, Moran C.P. Sigma H-directed transcription of citG in Bacillus subtilis. Journal of bacteriology 171:5928-32 (1989). [Pubmed] Qi F.X, Doi R.H. Localization of a second SigH promoter in the Bacillus subtilis sigA operon and regulation of dnaE expression by the promoter. Journal of bacteriology 172:5631-6 (1990). [Pubmed] Carter H.L, Wang L.F, Doi R.H, Moran C.P. rpoD operon promoter used by sigma H-RNA polymerase in Bacillus subtilis. Journal of bacteriology 170:1617-21 (1988). [Pubmed] Gonzy-Tréboul G, Karmazyn-Campelli C, Stragier P. Developmental regulation of transcription of the Bacillus subtilis ftsAZ operon. Journal of molecular biology 224:967-79 (1992). [Pubmed] Fukuchi K, Kasahara Y, Asai K, Kobayashi K, Moriya S, Ogasawara N. The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis. Microbiology (Reading, England) 146 ( Pt 7):1573-83 (2000). [Pubmed] Gholamhoseinian A, Shen Z, Wu J.J, Piggot P. Regulation of transcription of the cell division gene ftsA during sporulation of Bacillus subtilis. Journal of bacteriology 174:4647-56 (1992). [Pubmed] Micka B, Groch N, Heinemann U, Marahiel M.A. Molecular cloning, nucleotide sequence, and characterization of the Bacillus subtilis gene encoding the DNA-binding protein HBsu. Journal of bacteriology 173:3191-8 (1991). [Pubmed] Micka B, Marahiel M.A. The DNA-binding protein HBsu is essential for normal growth and development in Bacillus subtilis. Biochimie 74:641-50 (). [Pubmed] Fernández S, Alonso J.C. Bacillus subtilis sequence-independent DNA-binding and DNA-bending protein Hbsu negatively controls its own synthesis. Gene 231:187-93 (1999). [Pubmed] Predich M, Nair G, Smith I. Bacillus subtilis early sporulation genes kinA, spo0F, and spo0A are transcribed by the RNA polymerase containing sigma H. Journal of bacteriology 174:2771-8 (1992). [Pubmed] Antoniewski C, Savelli B, Stragier P. The spoIIJ gene, which regulates early developmental steps in Bacillus subtilis, belongs to a class of environmentally responsive genes. Journal of bacteriology 172:86-93 (1990). [Pubmed] Ishikawa S, Hara Y, Ohnishi R, Sekiguchi J. Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis. Journal of bacteriology 180:2549-55 (1998). [Pubmed] Lee S, Price C.W. The minCD locus of Bacillus subtilis lacks the minE determinant that provides topological specificity to cell division. Molecular microbiology 7:601-10 (1993). [Pubmed] Carter H.L, Tatti K.M, Moran C.P. Cloning of a promoter used by sigma H RNA polymerase in Bacillus subtilis. Gene 96:101-5 (1990). [Pubmed] Lazazzera B.A, Kurtser I.G, McQuade R.S, Grossman A.D. An autoregulatory circuit affecting peptide signaling in Bacillus subtilis. Journal of bacteriology 181:5193-200 (1999). [Pubmed] McQuade R.S, Comella N, Grossman A.D. Control of a family of phosphatase regulatory genes (phr) by the alternate sigma factor sigma-H of Bacillus subtilis. Journal of bacteriology 183:4905-9 (2001). [Pubmed] Eymann C, Mittenhuber G, Hecker M. The stringent response, sigmaH-dependent gene expression and sporulation in Bacillus subtilis. Molecular & general genetics : MGG 264:913-23 (2001). [Pubmed] Chibazakura T, Kawamura F, Asai K, Takahashi H. Effects of spo0 mutations on spo0A promoter switching at the initiation of sporulation in Bacillus subtilis. Journal of bacteriology 177:4520-3 (1995). [Pubmed] Lewandoski M, Dubnau E, Smith I. Transcriptional regulation of the spo0F gene of Bacillus subtilis. Journal of bacteriology 168:870-7 (1986). [Pubmed] Han W.D, Kawamoto S, Hosoya Y, Fujita M, Sadaie Y, Suzuki K, Ohashi Y, Kawamura F, Ochi K. A novel sporulation-control gene (spo0M) of Bacillus subtilis with a sigmaH-regulated promoter. Gene 217:31-40 (1998). [Pubmed] Wu J.J, Howard M.G, Piggot P.J. Regulation of transcription of the Bacillus subtilis spoIIA locus. Journal of bacteriology 171:692-8 (1989). [Pubmed] Wu J.J, Piggot P.J, Tatti K.M, Moran C.P. Transcription of the Bacillus subtilis spoIIA locus. Gene 101:113-6 (1991). [Pubmed] Zuber P, Losick R. Use of a lacZ fusion to study the role of the spoO genes of Bacillus subtilis in developmental regulation. Cell 35:275-83 (1983). [Pubmed] Segall J, Losick R. Cloned Bacillus subtilis DNA containing a gene that is activated early during sporulation. Cell 11:751-61 (1977). [Pubmed] Haldenwang W.G, Losick R. A modified RNA polymerase transcribes a cloned gene under sporulation control in Bacillus subtilis. Nature 282:256-60 (1979). [Pubmed] Haldenwang W.G, Losick R. Novel RNA polymerase sigma factor from Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America 77:7000-4 (1980). [Pubmed] Haldenwang W.G, Lang N, Losick R. A sporulation-induced sigma-like regulatory protein from B. subtilis. Cell 23:615-24 (1981). [Pubmed] Moran C.P, Lang N, Banner C.D, Haldenwang W.G, Losick R. Promoter for a developmentally regulated gene in Bacillus subtilis. Cell 25:783-91 (1981). [Pubmed] Banner C.D, Moran C.P, Losick R. Deletion analysis of a complex promoter for a developmentally regulated gene from Bacillus subtilis. Journal of molecular biology 168:351-65 (1983). [Pubmed] Johnson W.C, Moran C.P, Losick R. Two RNA polymerase sigma factors from Bacillus subtilis discriminate between overlapping promoters for a developmentally regulated gene. Nature 302:800-4 (1983). [Pubmed] Carter H.L, Moran C.P. New RNA polymerase sigma factor under spo0 control in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America 83:9438-42 (1986). [Pubmed] Losick R, Youngman P, Piggot P.J. Genetics of endospore formation in Bacillus subtilis. Annual review of genetics 20:625-69 (1986). [Pubmed] Dubnau E, Weir J, Nair G, Carter L, Moran C, Smith I. Bacillus sporulation gene spo0H codes for sigma 30 (sigma H). Journal of bacteriology 170:1054-62 (1988). [Pubmed] Zuber P, Healy J, Carter H.L, Cutting S, Moran C.P, Losick R. Mutation changing the specificity of an RNA polymerase sigma factor. Journal of molecular biology 206:605-14 (1989). [Pubmed] Resnekov O, Driks A, Losick R. Identification and characterization of sporulation gene spoVS from Bacillus subtilis. Journal of bacteriology 177:5628-35 (1995). [Pubmed] Wray L.V, Ferson A.E, Fisher S.H. Expression of the Bacillus subtilis ureABC operon is controlled by multiple regulatory factors including CodY, GlnR, TnrA, and Spo0H. Journal of bacteriology 179:5494-501 (1997). [Pubmed] Pedersen L.B, Murray T, Popham D.L, Setlow P. Characterization of dacC, which encodes a new low-molecular-weight penicillin-binding protein in Bacillus subtilis. Journal of bacteriology 180:4967-73 (1998). [Pubmed] Varón D, Brody M.S, Price C.W. Bacillus subtilis operon under the dual control of the general stress transcription factor sigma B and the sporulation transcription factor sigma H. Molecular microbiology 20:339-50 (1996). [Pubmed] Drzewiecki K, Eymann C, Mittenhuber G, Hecker M. The yvyD gene of Bacillus subtilis is under dual control of sigmaB and sigmaH. Journal of bacteriology 180:6674-80 (1998). [Pubmed] |
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