DNA Binding Motif

						

			
Accessions: M0127 (AthalianaCistrome v4_May2016)

			
Names: SHN3.DAP, T25150;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: wCCrCCgCCrCCdCCrCCgCc
Weblogo: 
PSSM: P0      A      C      G      T
01     90     24     46    160      w
02      8    230     39     43      C
03     29    274      6     11      C
04    106     14    130     70      r
05     16    292      9      3      C
06      7    301      2     10      C
07     76      4    197     43      g
08      5    281      9     25      C
09     18    302      0      0      C
10     98      4    164     54      r
11     16    243     10     51      C
12     26    250      7     37      C
13     82      1    121    116      d
14      2    297      3     18      C
15     18    288      4     10      C
16     81      0    192     47      r
17      8    294      4     14      C
18     15    270      6     29      C
19     66      8    202     44      g
20     19    252      1     48      C
21     37    212     11     60      c
Binding TFs: T25150 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.