DNA Binding Motif

						

			
Accessions: 3dzu_D (3D-footprint 20231221)

			
Names: Peroxisome proliferator-activated receptor gamma
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide
Length: 11
Consensus: AAAnnAGGTcA
Weblogo: 
PSSM: P0      A      C      G      T
01     69      9      9      9      A
02     96      0      0      0      A
03     82      4      6      4      A
04     24     24     24     24      n
05     24     24     24     24      n
06     82      6      4      4      A
07      0      1     91      4      G
08      0      0     96      0      G
09      0      0      0     96      T
10     18     65      4      9      c
11     84      4      4      4      A
Binding TFs: 3dzu_D (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
Binding Sites: 3dzu_C
3dzu_F
			
Publications: Chandra V, Huang P, Hamuro Y, Raghuram S, Wang Y, Burris T.P, Rastinejad F. Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA. Nature 456:350-6 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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