DNA Binding Motif

						

			
Accessions: PAX9_methyl_1 (HT-SELEX2 May2017)

			
Names: PAX9
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: ysGTCrCGSwTsAsyGm
Weblogo: 
PSSM: P0      A      C      G      T
01   3432   4933   3268   5340      y
02   3417   8694   8280   4196      s
03    216     90  16973   2340      G
04   2776    600    149  16973      T
05    457  16973     60   4103      C
06  10953     24   6020     89      r
07     80  16973     23   3742      C
08    190     28  16973      2      G
09     20  16973   7381     27      S
10   7911   2224    732   9063      w
11    427   4131     27  16973      T
12    149   6385  10589    118      s
13  16973    161   4797     72      A
14   3835   4702   4848   3589      s
15    260   8712    215   8261      y
16   1977    815  16973   3558      G
17   6455   6462   3993     63      m
Binding TFs: PAX9 ('Paired box' domain, Homeodomain-like domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.