DNA Binding Motif
| Accessions: | MA1585.2 (JASPAR 2024) |
| Names: | ZKSCAN1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 9 |
| Consensus: | AyAGTAGGt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 4633 456 584 454 A 02 187 2268 364 3308 y 03 6054 53 20 0 A 04 18 5 6092 12 G 05 0 0 0 6127 T 06 6079 48 0 0 A 07 12 101 5980 34 G 08 13 12 6075 27 G 09 605 1303 750 3469 t |
| Type: | Heterodimer |
| Binding TFs: | P17029 (Zinc finger, C2H2 type, KRAB box, SCAN domain, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) P17029 |
| Binding Sites: | MA1585.2.1 MA1585.2.10 / MA1585.2.6 MA1585.2.11 / MA1585.2.12 / MA1585.2.13 / MA1585.2.4 MA1585.2.14 / MA1585.2.15 / MA1585.2.18 / MA1585.2.3 / MA1585.2.7 / MA1585.2.8 MA1585.2.16 / MA1585.2.2 MA1585.2.17 MA1585.2.19 MA1585.2.20 / MA1585.2.5 MA1585.2.9 |
| Publications: | Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
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