DNA Binding Motif

						

			
Accessions: MA1670.1 (JASPAR 2024)

			
Names: DREB1C
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: wwttRCCGACAtaww
Weblogo: 
PSSM: P0      A      C      G      T
01   2439   2044   1220   2749      w
02   2252   1566   1900   2734      w
03   1988   1872   1172   3420      t
04   1562   1719   1265   3906      t
05   2243     45   6059    105      R
06     59   7517     35    841      C
07     43   8357     15     37      C
08     43     38   8333     38      G
09   8318     50     48     36      A
10     28   8363     26     35      C
11   6267    594    647    944      A
12   1931    855    561   5105      t
13   2883   1880   1687   2002      a
14   2984   1292   1942   2234      w
15   2781   1613   1517   2541      w
Type: Heterodimer
Binding TFs: Q9SYS6 (AP2 domain)
Q9SYS6
Binding Sites: MA1670.1.5 / MA1670.1.9
MA1670.1.11 / MA1670.1.7
MA1670.1.15
MA1670.1.10 / MA1670.1.16
MA1670.1.18
MA1670.1.12 / MA1670.1.19
MA1670.1.20
MA1670.1.1 / MA1670.1.2
MA1670.1.3
MA1670.1.2 / MA1670.1.4
MA1670.1.8
MA1670.1.1
MA1670.1.10 / MA1670.1.6
MA1670.1.12 / MA1670.1.8
MA1670.1.13
MA1670.1.14 / MA1670.1.9
MA1670.1.11 / MA1670.1.17
MA1670.1.5
MA1670.1.6
MA1670.1.4 / MA1670.1.7
MA1670.1.19
MA1670.1.13
MA1670.1.14
MA1670.1.15
MA1670.1.16
MA1670.1.17
MA1670.1.18
MA1670.1.20
MA1670.1.3
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.