DNA Binding Motif

						

			
Accessions: UP00575A_2 (UniPROBE 20160601)

			
Names: ARABIDOPSIS NAC DOMAIN PROTEIN 66, At3g61910, F21F14.80, NAC domain-containing protein 66, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC transcription factor NST2, NAC066, NST2, Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 2
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 13
Consensus: swaCACGCaAycw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.20   0.33   0.29   0.17      s
02   0.26   0.12   0.08   0.53      w
03   0.67   0.09   0.13   0.11      a
04   0.03   0.75   0.02   0.20      C
05   0.87   0.07   0.04   0.03      A
06   0.06   0.87   0.03   0.05      C
07   0.04   0.03   0.90   0.03      G
08   0.09   0.76   0.07   0.08      C
09   0.67   0.18   0.03   0.12      a
10   0.85   0.04   0.01   0.10      A
11   0.15   0.28   0.07   0.50      y
12   0.13   0.52   0.25   0.11      c
13   0.36   0.13   0.21   0.30      w
Binding TFs: UP00575A (No apical meristem (NAM) protein)
Binding Sites: TTACGCAA
TTACGTAA
AAGCAATC
ACAAGCAA
ACACGCAA
ACGCAACC
ACGCAATC
ATAACGTA
ATACGCAA
ATAGCGTA
ATTGCGTA
ATTGCGTG
CACGCAAC
GTAACGTA
GTACGCAA
GTAGCGTA
GTTGCGTA
TAACGTAA
TACGCTAA
TAGCGTAA
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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