DNA Binding Motif

Accessions: UP00575A_2 (UniPROBE 20160601)
Names: ARABIDOPSIS NAC DOMAIN PROTEIN 66, At3g61910, F21F14.80, NAC domain-containing protein 66, NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC transcription factor NST2, NAC066, NST2, Protein NAC SECONDARY WALL THICKENING PROMOTING FACTOR 2
Organisms: Arabidopsis thaliana
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 13
Consensus: swaCACGCaAycw
Weblogo:
PSSM: P0 A C G T
01 0.20 0.33 0.29 0.17 s
02 0.26 0.12 0.08 0.53 w
03 0.67 0.09 0.13 0.11 a
04 0.03 0.75 0.02 0.20 C
05 0.87 0.07 0.04 0.03 A
06 0.06 0.87 0.03 0.05 C
07 0.04 0.03 0.90 0.03 G
08 0.09 0.76 0.07 0.08 C
09 0.67 0.18 0.03 0.12 a
10 0.85 0.04 0.01 0.10 A
11 0.15 0.28 0.07 0.50 y
12 0.13 0.52 0.25 0.11 c
13 0.36 0.13 0.21 0.30 w
Binding TFs: UP00575A (No apical meristem (NAM) protein)
Binding Sites: TTACGCAA
TTACGTAA
AAGCAATC
ACAAGCAA
ACACGCAA
ACGCAACC
ACGCAATC
ATAACGTA
ATACGCAA
ATAGCGTA
ATTGCGTA
ATTGCGTG
CACGCAAC
GTAACGTA
GTACGCAA
GTAGCGTA
GTTGCGTA
TAACGTAA
TACGCTAA
TAGCGTAA
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

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