DNA Binding Motif
| Accessions: | UP00324A_1 (UniPROBE 20160601) |
| Names: | Basic-helix-loop-helix protein SGC1, O6233, Serine-rich protein TYE7, Tye7, YOR344C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | gwkgmrTCACGTGAygmmbw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.21 0.24 0.39 0.16 g 02 0.33 0.24 0.17 0.25 w 03 0.19 0.15 0.32 0.34 k 04 0.18 0.18 0.47 0.16 g 05 0.31 0.43 0.13 0.13 m 06 0.51 0.07 0.39 0.03 r 07 0.06 0.10 0.03 0.81 T 08 0.01 0.95 0.02 0.02 C 09 0.92 0 0.03 0.05 A 10 0 0.84 0.13 0.02 C 11 0.02 0.13 0.84 0 G 12 0.05 0.03 0 0.92 T 13 0.02 0.02 0.95 0.01 G 14 0.81 0.03 0.10 0.06 A 15 0 0.39 0.08 0.53 y 16 0.13 0.18 0.51 0.18 g 17 0.27 0.43 0.13 0.18 m 18 0.39 0.26 0.18 0.16 m 19 0.15 0.31 0.28 0.25 b 20 0.27 0.23 0.18 0.33 w |
| Binding TFs: | UP00324A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | TCAGCTGA AACACGTG ACACGTGA ACCACGTG ATCACCTG ATCACGTG CACCTGAC CACGCCAC CACGTGAC CACGTGAG CACGTGGC CCACCTGA CCACGTGA GCACGTGA TCACCTGA TCACGCCA TCACGTGA ACGTGACG CACGAGAC TCACGAGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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