DNA Binding Motif

						

			
Accessions: MA0965.2 (JASPAR 2024)

			
Names: BIM2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 16
Consensus: wwwgkCACGTGmcwww
Weblogo: 
PSSM: P0      A      C      G      T
01   3104   2178   2211   2885      w
02   3238   2012   2323   2805      w
03   3383   1958   1799   3238      w
04   2362   1874   4148   1994      g
05   2197   1902   3272   3007      k
06     28  10294     20     36      C
07  10091     36    166     85      A
08     16  10174     23    165      C
09    162     23  10179     14      G
10     84    165     36  10093      T
11     36     20  10294     28      G
12   3003   3275   1899   2201      m
13   1996   4150   1874   2358      c
14   3238   1796   1964   3380      w
15   2808   2323   2010   3237      w
16   2882   2214   2174   3108      w
Type: Heterodimer
Binding TFs: Q9CAA4 (Helix-loop-helix DNA-binding domain)
Q9CAA4
Binding Sites: MA0965.2.1
MA0965.2.10
MA0965.2.11
MA0965.2.12
MA0965.2.13
MA0965.2.14
MA0965.2.15
MA0965.2.16
MA0965.2.17
MA0965.2.18
MA0965.2.19
MA0965.2.2
MA0965.2.20
MA0965.2.3
MA0965.2.4
MA0965.2.5
MA0965.2.6
MA0965.2.7
MA0965.2.8
MA0965.2.9
			
Publications: Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.