DNA Binding Motif

						

			
Accessions: RXRA_HUMAN.H10MO.C|M01493 (HOCOMOCO 10)

			
Names: RXRA
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1}
Length: 17
Consensus: mwstrGgksAAAGGtcA
Weblogo: 
PSSM: P0      A      C      G      T
01    187    105     41     72      m
02    230     22     32    121      w
03     66    108    165     66      s
04     72     52     81    200      t
05    172     17    168     48      r
06     72      7    303     23      G
07     86     23    267     29      g
08     88     31    138    148      k
09     41    233    103     28      s
10    379     13      5      8      A
11    278     16     94     17      A
12    345      2     56      2      A
13     68      3    325      9      G
14     38     14    301     52      G
15     12     70     55    268      t
16     63    225     56     61      c
17    329     25     23     28      A
Binding TFs: RXRA_HUMAN (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Nuclear/hormone receptor activator site AF-1)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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