DNA Binding Motif

						

			
Accessions: GCM1_NHLH1_2 (HumanTF2 1.0)

			
Names: GCM1_NHLH1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 20
Consensus: gCAGsTGykgyysrTrmGGG
Weblogo: 
PSSM: P0      A      C      G      T
01     17     28    142     56      g
02     14    244     26      0      C
03    244      0      1     10      A
04     12     41    244      0      G
05     24    244    112     33      s
06     11      0      6    244      T
07      0     17    244      0      G
08     51     94     27     71      y
09     17      1    156     70      k
10     33     35    138     38      g
11     48     97     24     75      y
12     37     85     50     71      y
13      3    128     89     23      s
14    124     44     67      9      r
15     47     13     36    244      T
16     76     25    168      0      r
17    156    244     48     67      m
18     72      0    244     29      G
19      0     19    244      6      G
20      1      0    244      1      G
Type: Heterodimer
Binding TFs: GCM1_TF1 (GCM motif protein)
NHLH1_TF2 (Helix-loop-helix DNA-binding domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.