DNA Binding Motif
| Accessions: | UP00393A_1 (UniPROBE 20160601) |
| Names: | NONE, PFF0200c |
| Organisms: | Plasmodium falciparum |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | gArGGGTGCACCyh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.08 0.19 0.52 0.22 g 02 0.69 0.13 0.11 0.07 A 03 0.49 0.06 0.26 0.18 r 04 0.17 0.04 0.72 0.07 G 05 0.04 0 0.95 0.01 G 06 0 0 0.99 0.01 G 07 0 0.01 0 0.99 T 08 0.01 0 0.99 0 G 09 0 0.99 0 0 C 10 0.95 0 0.05 0 A 11 0.04 0.90 0.02 0.05 C 12 0.10 0.74 0.02 0.14 C 13 0.12 0.40 0.20 0.28 y 14 0.28 0.25 0.11 0.35 h |
| Binding TFs: | UP00393A (AP2 domain) |
| Binding Sites: | AGGGTGCA AGGTGCAC AGTGCACC AGTGCACT ATGCACCC CGGTGCAC CGTGCACC GAGGTGCA GCGCACCC GGGGTGCA GGGTGCAA GGGTGCAC GGTGCACA GGTGCACC GTGCACCA GTGGTGCA TGCACCCA CGCACCCC GATGCACC GGTGCATA |
| Publications: | De Silva EK, Gehrke AR, Olszewki K, Leon I, Chahal JS, Bulyk ML, Llinas M. Specific DNA-binding by Apicomplexan AP2 transcription factors. Proc. Natl. Acad. Sci. USA. June 17, 2008; vol. 105, no. 24, 8393-8398 [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.