DNA Binding Motif
| Accessions: | UP00502B_1 (UniPROBE 20160601) |
| Names: | S. purpuratus Tbrain (T-box transcription factor), SpTbr_rep2 |
| Organisms: | Strongylocentrotus purpuratus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | smkvssgAGGTGyGAAmyrsdy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.39 0.26 0.13 s 02 0.25 0.39 0.15 0.21 m 03 0.16 0.21 0.32 0.31 k 04 0.25 0.32 0.25 0.17 v 05 0.17 0.32 0.34 0.17 s 06 0.24 0.29 0.36 0.11 s 07 0.24 0.15 0.50 0.10 g 08 0.78 0 0.19 0.03 A 09 0.02 0.01 0.95 0.01 G 10 0 0.01 0.99 0 G 11 0 0.09 0 0.91 T 12 0 0 0.99 0 G 13 0.01 0.39 0 0.59 y 14 0 0.10 0.78 0.12 G 15 0.90 0 0.09 0 A 16 0.82 0.05 0.05 0.09 A 17 0.32 0.39 0.09 0.19 m 18 0.23 0.31 0.21 0.25 y 19 0.28 0.24 0.28 0.21 r 20 0.21 0.33 0.25 0.21 s 21 0.29 0.07 0.31 0.34 d 22 0.23 0.30 0.17 0.31 y |
| Binding TFs: | UP00502B (T-box) |
| Binding Sites: | AAGTGTGA AGGTGCGA AGGTGTCA AGGTGTCG AGGTGTGA AGGTGTTA AGTGTGAA ATCACACC GGGTGTGA GGTGCGAA GGTGTGAA GTGTGAAA GTGTGAAC TCACACCA AAGGTGTC ACACCTCC AGGTGTGG AGGTGTTG CACACCTC CTCACACC |
| Publications: | Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF. Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. Mol Biol Evol 31:2672-88 (2014). [Pubmed] |
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