Database '3D-footprint 20231221' (DNA Binding Motifs 1351-1400)

If you want to search for an specific entry use the Search Entry Form. 
		
If you want to search for a protein sequence or a DNA motif use the Sequence Search Form.

Pages: 1, 
2, 
3, 
4, 
5, 
6, 
7, 
8, 
9, 
10, 
11, 
12, 
13, 
14, 
15, 
16, 
17, 
18, 
19, 
20, 
21, 
22, 
23, 
24, 
25, 
26, 
27, 
28, 
29, 
30, 
31



		

		
AccessionsNamesConsensusOrganismsDescription and notes
1tf3_ATRANSCRIPTION FACTOR IIIATGkATGGGAGAmXenopus laevisTFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES
6cnc_RTranscription factor IIIB 70 kDa subunit,TATA-box-binding protein,Transcription factor IIIB 70						
						


								AnnnnnnnnnnnnnACTAATAnnTGTSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		Yeast RNA polymerase III open complex
5vpe_DTranscription factor jun-DAnTCACHomo sapiensTranscription factor FosB/JunD bZIP domain in complex with cognate DNA,						
						


						
5vpf_BTranscription factor jun-DACTCAHomo sapiensTranscription factor FosB/JunD bZIP domain in complex with cognate DNA,						
						


						
4eot_ATranscription factor MafATGCtgaGTHomo sapiensCrystal structure of the MafA homodimer bound to the consensus						
						


						
4eot_ABTranscription factor MafAtGCnnACTnnGCaHomo sapiensCrystal structure of the MafA homodimer bound to the consensus						
						


						
2wt7_BTRANSCRIPTION FACTOR MAFBAGTnaGCaMus musculusCrystal structure of the bZIP heterodimeric complex MafB:cFos bound to						
						


						
2wty_ABTRANSCRIPTION FACTOR MAFBTGCnnACTnAGCAMus musculusCrystal structure of the homodimeric MafB in complex with the						
						


						
2wty_BTRANSCRIPTION FACTOR MAFBTGCnnACMus musculusCrystal structure of the homodimeric MafB in complex with the						
						


						
4auw_ABTRANSCRIPTION FACTOR MAFBTGCtnACGTnarCAMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH						
						


						
4auw_ETRANSCRIPTION FACTOR MAFBTGCtnnCgMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH						
						


						
4auw_EFTRANSCRIPTION FACTOR MAFBTGCnAACGnTTGCAMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH						
						


						
3a5t_ABTranscription factor MafGTGAtAAGTTaGCAMus musculusCrystal structure of MafG-DNA complex
3a5t_BTranscription factor MafGtGCtkactMus musculusCrystal structure of MafG-DNA complex
5gnj_ABTranscription factor MYC2taCACGTGArabidopsis thalianaStructure of a transcription factor and DNA complex
5gnj_GINTranscription factor MYC2CaCGtGtArabidopsis thalianaStructure of a transcription factor and DNA complex
5gnj_ITranscription factor MYC2ACACGArabidopsis thalianaStructure of a transcription factor and DNA complex
1o4x_ABtranscription factor Oct-1CATTnGCATGACAAAGHomo sapiensTERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1						
						


						
2i9t_ABTranscription factor p65GGaanTtCCCMus musculusStructure of NF-kB p65-p50 heterodimer bound to PRDII element of						
						


						
3gut_ABDTranscription factor p65GTCCCnnnnGGAAnGTCCHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to						
						


						
3gut_CFTranscription factor p65GTCCAnTGGAAHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to						
						


						
3gut_ETranscription factor p65TTCCHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to						
						


						
3gut_EGHTranscription factor p65TTCCgnnnGGGACnTTCCaHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to						
						


						
5u01_ABCDTranscription factor p65CGGAAnTTCCCGGGAAnTTCCGCMus musculusCooperative DNA binding by two RelA dimers
5u01_CTranscription factor p65cGGGAaMus musculusCooperative DNA binding by two RelA dimers
2o61_ATranscription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion						
						


								GGAGAnnTTAAnnnnnnnnnTTCCTCHomo sapiensCrystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b						
						


						
2o61_ABTranscription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion						
						


								GGAGAnnTTAAnnTGGGAAnTTCCTCHomo sapiensCrystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b						
						


						
1gd2_EFTRANSCRIPTION FACTOR PAP1GGTTACGTAACCSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
1gd2_GTRANSCRIPTION FACTOR PAP1GGTTACGSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
1gd2_GHTRANSCRIPTION FACTOR PAP1GGTTACGTAACCSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)		CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
6o19_ATranscription factor Pho7TCGGnnnnTAAASchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)		Crystal Structure of Pho7 complex with pho1 promoter site 2
2v2t_ATRANSCRIPTION FACTOR RELBGGgAntMus musculusX-ray structure of a NF-kB p50-RelB-DNA complex
2v2t_ABTRANSCRIPTION FACTOR RELBGGkAAnTcCCMus musculusX-ray structure of a NF-kB p50-RelB-DNA complex
6t78_ATranscription factor SOX-11TaAATTgTHomo sapiensStructure of human Sox11 transcription factor in complex with a						
						


						
6t78_ABTranscription factor SOX-11ACAATAAATTGTHomo sapiensStructure of human Sox11 transcription factor in complex with a						
						


						
3f27_DTranscription factor SOX-17ACAATaMus musculusStructure of Sox17 Bound to DNA
4y60_CTranscription factor SOX-18ACAATgMus musculusStructure of SOX18-HMG/PROX1-DNA
1gt0_DTRANSCRIPTION FACTOR SOX-2CTTTGTnngMus musculusCrystal structure of a POU/HMG/DNA ternary complex
1o4x_BTranscription factor SOX-2gCAAAGHomo sapiensTERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1						
						


						
6ht5_DETranscription factor SOX-2CATTGTTATGCMus musculusOct4/Sox2:UTF1 structure
3u2b_CTranscription factor SOX-4cTaTTGTMus musculusStructure of the Sox4 HMG domain bound to DNA
4euw_ATranscription factor SOX-9TcAAAgHomo sapiensCrystal structure of a HMG domain of transcription factor SOX-9						
						


						
4s2q_DTranscription factor SOX-9wACAaAgMus musculusCrystal Structure of HMG domain of the chondrogenesis master regulator,						
						


						
5iyd_MTranscription initiation factor IIBTTTTnttnTTTnntTHomo sapiensHuman core-PIC in the initial transcribing state (no IIS)
1ngm_ETranscription initiation factor TFIIDTAtAAaASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		Crystal structure of a yeast Brf1-TBP-DNA ternary complex
1nh2_ACTranscription initiation factor TFIIDTAnAAaAcSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)		Crystal structure of a yeast TFIIA/TBP/DNA complex
1qn3_BTRANSCRIPTION INITIATION FACTOR TFIID-1TATAAaCgArabidopsis thalianaCrystal structure of the C(-25) Adenovirus major late promoter TATA						
						


						
1qn4_BTRANSCRIPTION INITIATION FACTOR TFIID-1aTtTTATAArabidopsis thalianaCrystal structure of the T(-24) Adenovirus major late promoter TATA						
						


						
1qn5_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTCTTATAArabidopsis thalianaCrystal structure of the G(-26) Adenovirus major late promoter TATA						
						


						
1qn6_BTRANSCRIPTION INITIATION FACTOR TFIID-1TATAAtAgArabidopsis thalianaCrystal structure of the T(-26) Adenovirus major late promoter TATA						
						


						
		

				

		


			

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.